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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BLCA cis rs10935120 1 rs9809619 chr3:134280948 CEP63 chr3:134204575-134293852:+ 0.23 3.97 8.43E-5 Height
BLCA cis rs7611238 1 rs9810077 chr3:195005422 C3orf21 chr3:194789015-194991895:- 0.31 6.1 2.65E-9 Body mass index
BLCA cis rs9876781 1 rs9812647 chr3:48448914 TREX1 chr3:48501186-48509043:+ 0.21 4.16 3.94E-5 Longevity
BLCA cis rs10935120 1 rs9813774 chr3:134227100 ANAPC13 chr3:134196547-134204865:- 0.49 7.99 1.6E-14 Height
BLCA cis rs10935120 1 rs9813774 chr3:134227100 CEP63 chr3:134204575-134293852:+ 0.24 4.2 3.36E-5 Height
BLCA cis rs10935120 1 rs9814567 chr3:134218557 ANAPC13 chr3:134196547-134204865:- -0.49 -7.66 1.5E-13 Height
BLCA cis rs10935120 1 rs9814567 chr3:134218557 CEP63 chr3:134204575-134293852:+ -0.26 -4.4 1.39E-5 Height
BLCA cis rs9815354 1 rs9815354 chr3:41912651 ULK4 chr3:41288091-42003660:- 0.64 9.5 2.29E-19 Diastolic blood pressure
BLCA cis rs9815354 1 rs9818169 chr3:41860599 ULK4 chr3:41288091-42003660:- 0.63 9.78 2.63E-20 Diastolic blood pressure
BLCA cis rs10935120 1 rs9819532 chr3:134288644 ANAPC13 chr3:134196547-134204865:- 0.49 7.81 5.66E-14 Height
BLCA cis rs10935120 1 rs9819532 chr3:134288644 CEP63 chr3:134204575-134293852:+ 0.22 3.83 0.00015 Height
BLCA cis rs9815354 1 rs9820192 chr3:41889281 ULK4 chr3:41288091-42003660:- 0.64 9.91 9.53E-21 Diastolic blood pressure
BLCA cis rs9815354 1 rs9823254 chr3:41894768 ULK4 chr3:41288091-42003660:- 0.64 9.5 2.29E-19 Diastolic blood pressure
BLCA cis rs9815354 1 rs9824731 chr3:41889698 ULK4 chr3:41288091-42003660:- 0.64 9.5 2.29E-19 Diastolic blood pressure
BLCA cis rs9815354 1 rs9825741 chr3:41761828 ULK4 chr3:41288091-42003660:- -0.62 -9.57 1.36E-19 Diastolic blood pressure